fastlink  most recent diff

View the most recent changes for the fastlink port at: fastlink.darwinports.com/diff
Scroll down toward the bottom of the page to get installation instructions for fastlink.
The raw portfile for fastlink 4.1P is located here:
http://fastlink.darwinports.com/dports/science/fastlink/Portfile
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Check for any related Fink projects here: pdb.finkproject.org/pdb/package.php/fastlink

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# $Id: Portfile 32947 2008-01-15 12:14:22Z ryandesign macports.org $

PortSystem 1.0
Name: fastlink
Version: 4.1P
Category: science
Maintainers: nomaintainer
Description: Genetic Analysis Software
Long Description: Genetic linkage analysis is a statistical technique used to map genes and find the approximate location of disease genes.
Homepage: http://www.ncbi.nlm.nih.gov/CBBresearch/Schaffer/fastlink.html
Platform: darwin
master_sites ftp://fastlink.nih.gov/pub/fastlink/
distfiles fastlink.tar.Z
checksums md5 fec6f6529776a366c9ee1ac563a9df12

set worksrcdir fastlink/4.1P/src

use_configure no

build.target installfast EXTRAFLAGS="-I${prefix}/include -I/usr/include -I/usr/include/malloc -L${prefix}/lib"

destroot {
xinstall -m 755 -W ${worksrcpath} lodscore ilink linkmap mlink unknown ${destroot}${prefix}/bin
xinstall -m 755 -d ${destroot}${prefix}/share/doc/fastlink
eval xinstall -m 444 [glob ${workpath}/fastlink/README.*] ${destroot}$prefix/share/doc/fastlink
eval xinstall -m 444 [glob ${workpath}/fastlink/*.ps] ${destroot}$prefix/share/doc/fastlink
}

If you haven't already installed Darwin Ports, you can find easy instructions for doing so at the main Darwin Ports page.
Once Darwin Ports has been installed, in a terminal window and while online, type the following and hit return:

%  cd /opt/local/bin/portslocation/dports/fastlink
%  sudo port install fastlink  
Password: 

You will then be prompted for your root password, which you should enter. You may have to wait for a few minutes while the software is retrieved from the network and installed for you. Y ou should see something that looks similar to:

--->  Fetching fastlink
--->  Verifying checksum for fastlink
--->  Extracting fastlink
--->  Configuring fastlink
--->  Building fastlink with target all

--->  Staging fastlink into destroot

--->  Installing fastlink

- Make sure that you do not close the terminal window while Darwin Ports is working. Once the software has been installed, you can find further information about using fastlink with these commands:

%  man fastlink
%  apropos fastlink
%  which fastlink
%  locate fastlink

 Where to find more information: